Package: EpiInvert 0.3.2

Luis Alvarez

EpiInvert: Variational Techniques in Epidemiology

Using variational techniques we address some epidemiological problems as the incidence curve decomposition by inverting the renewal equation as described in Alvarez et al. (2021) <doi:10.1073/pnas.2105112118> and Alvarez et al. (2022) <doi:10.3390/biology11040540> or the estimation of the functional relationship between epidemiological indicators. We also propose a learning method for the short time forecast of the trend incidence curve as described in Morel et al. (2022) <doi:10.1101/2022.11.05.22281904>.

Authors:Luis Alvarez [aut, cre], Jean-David Morel [ctb], Jean-Michel Morel [ctb]

EpiInvert_0.3.2.tar.gz
EpiInvert_0.3.2.zip(r-4.7)EpiInvert_0.3.2.zip(r-4.6)EpiInvert_0.3.2.zip(r-4.5)
EpiInvert_0.3.2.tgz(r-4.6-x86_64)EpiInvert_0.3.2.tgz(r-4.6-arm64)EpiInvert_0.3.2.tgz(r-4.5-x86_64)EpiInvert_0.3.2.tgz(r-4.5-arm64)
EpiInvert_0.3.2.tar.gz(r-4.7-arm64)EpiInvert_0.3.2.tar.gz(r-4.7-x86_64)EpiInvert_0.3.2.tar.gz(r-4.6-arm64)EpiInvert_0.3.2.tar.gz(r-4.6-x86_64)
EpiInvert_0.3.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
EpiInvert/json (API)
NEWS

# Install 'EpiInvert' in R:
install.packages('EpiInvert', repos = c('https://lalvarezmat.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lalvarezmat/epiinvert/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • festives - A dataset containing festive days in France, Germany, UK and the USA
  • incidence - A dataset containing daily incidence of COVID-19 for France, Germany, UK and the USA
  • incidence_weekly_aggregated - A dataset containing weekly aggregated incidence of COVID-19 for France, Germany, UK and the USA
  • owid - A dataset with COVID-19 indicators
  • restored_incidence_database - A dataset of restored daily incidence trend curves
  • si_distr_data - A dataset containing the values of a serial interval

On CRAN:

Conda:

cpp

3.18 score 3 stars 6 scripts 203 downloads 10 exports 1 dependencies

Last updated from:7b6afdda0b. Checks:11 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE171
linux-devel-x86_64NOTE190
source / vignettesOK233
linux-release-arm64NOTE182
linux-release-x86_64NOTE176
macos-release-arm64NOTE162
macos-release-x86_64NOTE257
macos-oldrel-arm64NOTE213
macos-oldrel-x86_64NOTE414
windows-develNOTE143
windows-releaseNOTE128
windows-oldrelNOTE110
wasm-releaseOK116

Exports:apply_delayEpiIndicatorsEpiIndicators_paramsEpiIndicators_plotEpiInvertEpiInvert_plotEpiInvertForecastEpiInvertForecast_plotjoint_indicators_by_dateselect_params

Dependencies:Rcpp